Resources

Here are some useful tools and references developed by our members:

Software & Tools

• napari
  a Python library for n-dimensional image visualisation, annotation, and analysis. Website
• Cecelia
  a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour. github
• napari-lattice
  a python package for deskewing, cropping, visualisation (with napari plugin), and analysis of lattice light sheet data. github

Tutorials & Learning

• Fiji Training Notes Google Site
  Cameron Nowell’s famous and comprehensive FIJI manual.
• BOMP Workshops and Resources BOMP
  Videos, PDFs, and links to workshops from the University of Melbourne The Biological Optical Microscopy Platform (BOMP).
• IMB Microscopy Playlist IMB Youtube
  Youtube channel of the microscopy facility at University of Queensland’s Institute for Molecular Bioscience.

Publications & Guidelines

• Cecelia: a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour Nature Communications

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Other Resources

Presented here is a list of links to things that have come up in our monthly meetings

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September Meeting

• ZIDAS 2025 Switzerland’s Image & Data Analysis School
  Website
• EPFLx: Image Processing and Analysis for Life Scientists
  A self guided, online image anlaysis curriculum from EPFL. Website
• CoLoc
  A collaborative board game to teach co-localization analysis. github
• Certificate in Small-Group Teaching (CSGT)
  Something to consider for new trainers - currently only open to Unimelb staff and graduates. webite

If you have a resource to share, let us know! 🚀