Resources

Here are some useful tools and references developed by our members:

Software & Tools

• napari
  a Python library for n-dimensional image visualisation, annotation, and analysis. Website
• Cecelia
  a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour. github
• napari-lattice
  a python package for deskewing, cropping, visualisation (with napari plugin), and analysis of lattice light sheet data. github

Tutorials & Learning

• Fiji Training Notes Google Site
  Cameron Nowell’s famous and comprehensive FIJI manual.
• BOMP Workshops and Resources BOMP
  Videos, PDFs, and links to workshops from the University of Melbourne The Biological Optical Microscopy Platform (BOMP).
• IMB Microscopy Playlist IMB Youtube
  Youtube channel of the microscopy facility at University of Queensland’s Institute for Molecular Bioscience.

Publications & Guidelines

• Cecelia: a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour Nature Communications

If you have a resource to share, let us know! 🚀